CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.463 rna-evm.model.Chr14.463 Chr14 14885216 14896295 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.464 rna-evm.model.Chr14.464 Chr14 14904318 15307057 PREDICTED: Negative elongation factor E GO:0003676;GO:0006355;GO:0032021 K15182
gene-evm.TU.Chr14.465 rna-evm.model.Chr14.465 Chr14 14978797 14983245 PREDICTED: BRISC and BRCA1-A complex member 1 nan K02186
gene-evm.TU.Chr14.466 rna-evm.model.Chr14.466 Chr14 15037584 15038615 PREDICTED: Protein FAM186A nan K20663
gene-evm.TU.Chr14.467 rna-evm.model.Chr14.467 Chr14 15038786 15040168 PREDICTED: Protein FAM186A nan K20663
gene-evm.TU.Chr14.468 rna-evm.model.Chr14.468 Chr14 15045278 15048000 PREDICTED: ankyrin repeat domain-containing protein 50 nan K08757
gene-evm.TU.Chr14.469 rna-evm.model.Chr14.469 Chr14 15121126 15137046 PREDICTED: E3 ubiquitin-protein ligase DZIP3 GO:0000209;GO:0003723;GO:0061630 K10642
gene-evm.TU.Chr14.47 rna-evm.model.Chr14.47 Chr14 1619216 1632985 uncharacterized protein nan K08188
gene-evm.TU.Chr14.471 rna-evm.model.Chr14.471 Chr14 15245017 15257252 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.472 rna-evm.model.Chr14.472 Chr14 15262761 15279077 PREDICTED: Negative elongation factor E GO:0003676;GO:0006355;GO:0032021 K15182

For more detailed data, you can explore the Download section to access the full dataset.