CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.435 rna-evm.model.Chr14.435 Chr14 13660222 13695432 PREDICTED: conjugal transfer protein TrbL nan K04344
gene-evm.TU.Chr14.436 rna-evm.model.Chr14.436 Chr14 13842573 13846835 PREDICTED: Putative protein FAM47C nan K10642
gene-evm.TU.Chr14.437 rna-evm.model.Chr14.437 Chr14 13953849 13960743 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan nan
gene-evm.TU.Chr14.441 rna-evm.model.Chr14.441 Chr14 14260319 14261259 PREDICTED: Protein unc-13 homolog C nan K07164
gene-evm.TU.Chr14.442 rna-evm.model.Chr14.442 Chr14 14277364 14284815 uncharacterized protein nan K24274
gene-evm.TU.Chr14.443 rna-evm.model.Chr14.443 Chr14 14313955 14331267 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr14.444 rna-evm.model.Chr14.444 Chr14 14433033 14434548 uncharacterized protein nan nan
gene-evm.TU.Chr14.445 rna-evm.model.Chr14.445 Chr14 14434858 14436084 PREDICTED: inner nuclear membrane protein Man1 nan nan
gene-evm.TU.Chr14.446 rna-evm.model.Chr14.446 Chr14 14436106 14438477 uncharacterized protein nan K06948
gene-evm.TU.Chr14.447 rna-evm.model.Chr14.447 Chr14 14464822 14467032 PREDICTED: Ribosome-binding protein 1 nan K04569

For more detailed data, you can explore the Download section to access the full dataset.