CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2085 rna-evm.model.Chr1.2085 Chr1 66126588 66134197 PREDICTED: GDNF-inducible zinc finger protein 1 GO:0003676 K22402
gene-evm.TU.Chr1.2086 rna-evm.model.Chr1.2086 Chr1 66137482 66148073 PREDICTED: Zinc finger protein 425 (Fragment) GO:0003676 K22402
gene-evm.TU.Chr1.2087 rna-evm.model.Chr1.2087 Chr1 66153987 66162533 PREDICTED: Vacuolar protein-sorting-associated protein 36 GO:0000814;GO:0032266;GO:0032509;GO:0043130 K12190
gene-evm.TU.Chr1.2088 rna-evm.model.Chr1.2088 Chr1 66165304 66177132 PREDICTED: Glutathione S-transferase C-terminal domain-containing protein nan K03501
gene-evm.TU.Chr1.2089 rna-evm.model.Chr1.2089 Chr1 66181305 66213627 PREDICTED: Mothers against decapentaplegic homolog 5 GO:0003700;GO:0005667;GO:0006355;GO:0007179 K04676
gene-evm.TU.Chr1.209 rna-evm.model.Chr1.209 Chr1 6500793 6503944 PREDICTED: PKD domain-containing protein nan K05636
gene-evm.TU.Chr1.2090 rna-evm.model.Chr1.2090 Chr1 66220421 66248728 PREDICTED: Demethylmenaquinone methyltransferase nan K00559
gene-evm.TU.Chr1.2091 rna-evm.model.Chr1.2091 Chr1 66255083 66260362 PREDICTED: Trans-aconitate 2-methyltransferase nan K18534
gene-evm.TU.Chr1.2092 rna-evm.model.Chr1.2092 Chr1 66443524 66460192 PREDICTED: Gastrula zinc finger protein XlCGF8.2DB (Fragment) GO:0003676;GO:0003677 K22402
gene-evm.TU.Chr1.2094 rna-evm.model.Chr1.2094 Chr1 66502651 66517847 PREDICTED: Pathogen-related protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.