CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.422 rna-evm.model.Chr14.422 Chr14 13155529 13190428 PREDICTED: ATP-binding cassette sub-family F member 1 GO:0005524;GO:0016887 K06184
gene-evm.TU.Chr14.423 rna-evm.model.Chr14.423 Chr14 13204653 13207260 PREDICTED: Kelch-like protein 24 GO:0005515 K10461
gene-evm.TU.Chr14.424 rna-evm.model.Chr14.424 Chr14 13223398 13224363 PREDICTED: Kelch-like protein 24 GO:0005515 K10461
gene-evm.TU.Chr14.425 rna-evm.model.Chr14.425 Chr14 13224441 13224993 PREDICTED: kelch-like protein 24/35 nan K10461
gene-evm.TU.Chr14.426 rna-evm.model.Chr14.426 Chr14 13234284 13234970 uncharacterized protein nan K10804
gene-evm.TU.Chr14.427 rna-evm.model.Chr14.427 Chr14 13262951 13276628 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.428 rna-evm.model.Chr14.428 Chr14 13283809 13295496 PREDICTED: Negative elongation factor E GO:0006355;GO:0032021 K15182
gene-evm.TU.Chr14.43 rna-evm.model.Chr14.43 Chr14 1449672 1475015 PREDICTED: Death-associated inhibitor of apoptosis 2 nan K04725
gene-evm.TU.Chr14.430 rna-evm.model.Chr14.430 Chr14 13324515 13344375 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr14.434 rna-evm.model.Chr14.434 Chr14 13640829 13641631 PREDICTED: calcium permeable stress-gated cation channel GO:0003677;GO:0006313;GO:0015074 K07499

For more detailed data, you can explore the Download section to access the full dataset.