CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.411 rna-evm.model.Chr14.411 Chr14 12847039 12869971 PREDICTED: 70 kDa neurofilament protein nan K18585
gene-evm.TU.Chr14.414 rna-evm.model.Chr14.414 Chr14 12924684 12925658 PREDICTED: sorting nexin-10/11 nan K10184
gene-evm.TU.Chr14.415 rna-evm.model.Chr14.415 Chr14 12943657 12983408 PREDICTED: General transcription factor 3C polypeptide 5 GO:0000127;GO:0006384 K15202
gene-evm.TU.Chr14.416 rna-evm.model.Chr14.416 Chr14 12988736 13013805 PREDICTED: RNA polymerase II subunit B1 CTD phosphatase Rpap2 GO:0008420;GO:0043175;GO:0070940 K20827
gene-evm.TU.Chr14.417 rna-evm.model.Chr14.417 Chr14 13016876 13028895 PREDICTED: Uncharacterized protein C6orf136 homolog nan nan
gene-evm.TU.Chr14.418 rna-evm.model.Chr14.418 Chr14 13032761 13060375 PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 3 GO:0004571;GO:0005509;GO:0016020 K10086
gene-evm.TU.Chr14.419 rna-evm.model.Chr14.419 Chr14 13071577 13095540 PREDICTED: Anaphase-promoting complex subunit 5 GO:0005515;GO:0005680 K03352
gene-evm.TU.Chr14.42 rna-evm.model.Chr14.42 Chr14 1431154 1441673 PREDICTED: Kinesin-like protein KIN-7M, chloroplastic nan K21504
gene-evm.TU.Chr14.420 rna-evm.model.Chr14.420 Chr14 13098167 13142785 PREDICTED: Golgin subfamily A member 2 GO:0005794 K20358
gene-evm.TU.Chr14.421 rna-evm.model.Chr14.421 Chr14 13143139 13148694 uncharacterized protein GO:0042981 K04399

For more detailed data, you can explore the Download section to access the full dataset.