CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.389 rna-evm.model.Chr14.389 Chr14 12074086 12105426 PREDICTED: protocadherin Fat 1/2/3 nan nan
gene-evm.TU.Chr14.39 rna-evm.model.Chr14.39 Chr14 1363668 1364464 uncharacterized protein nan nan
gene-evm.TU.Chr14.392 rna-evm.model.Chr14.392 Chr14 12199453 12201970 uncharacterized protein GO:0046872 K23682
gene-evm.TU.Chr14.393 rna-evm.model.Chr14.393 Chr14 12202380 12202916 PREDICTED: contactin 2 nan K21037
gene-evm.TU.Chr14.395 rna-evm.model.Chr14.395 Chr14 12293073 12305762 PREDICTED: UNKNOWN nan K02473
gene-evm.TU.Chr14.396 rna-evm.model.Chr14.396 Chr14 12378148 12379233 PREDICTED: formin 2 nan K02184
gene-evm.TU.Chr14.398_evm.TU.Chr14.399 rna-evm.model.Chr14.398_evm.model.Chr14.399 Chr14 12443414 12565126 PREDICTED: Potassium channel subfamily T member 2 GO:0006813;GO:0016020 K04946
gene-evm.TU.Chr14.4 rna-evm.model.Chr14.4 Chr14 47503 80806 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr14.40 rna-evm.model.Chr14.40 Chr14 1365997 1391455 uncharacterized protein nan K04725
gene-evm.TU.Chr14.400 rna-evm.model.Chr14.400 Chr14 12565228 12567393 PREDICTED: Uncharacterized 29.1 kDa protein in cryB1 5'region nan K22530

For more detailed data, you can explore the Download section to access the full dataset.