CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.350 rna-evm.model.Chr14.350 Chr14 11309914 11310831 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase nan K11714
gene-evm.TU.Chr14.351 rna-evm.model.Chr14.351 Chr14 11314740 11317483 PREDICTED: Alpha-(1,3)-fucosyltransferase fut-5 GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr14.353 rna-evm.model.Chr14.353 Chr14 11335302 11345511 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr14.354 rna-evm.model.Chr14.354 Chr14 11350160 11364282 uncharacterized protein nan K08157
gene-evm.TU.Chr14.355 rna-evm.model.Chr14.355 Chr14 11380305 11382471 PREDICTED: Insoluble matrix shell protein 5 GO:0005509 K13448
gene-evm.TU.Chr14.356 rna-evm.model.Chr14.356 Chr14 11383872 11394325 PREDICTED: Dual specificity protein phosphatase 12 GO:0006470;GO:0008138;GO:0016311;GO:0016791 K14819
gene-evm.TU.Chr14.357 rna-evm.model.Chr14.357 Chr14 11395753 11403208 uncharacterized protein nan K21081
gene-evm.TU.Chr14.358 rna-evm.model.Chr14.358 Chr14 11407464 11443580 PREDICTED: Protein SCAI GO:0003714;GO:0006351 nan
gene-evm.TU.Chr14.359 rna-evm.model.Chr14.359 Chr14 11466221 11469020 PREDICTED: Protein Daple GO:0000921;GO:0005940;GO:0016020 K10642
gene-evm.TU.Chr14.36 rna-evm.model.Chr14.36 Chr14 1281243 1281500 PREDICTED: DUF3344 domain-containing protein nan K06213

For more detailed data, you can explore the Download section to access the full dataset.