CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.339 rna-evm.model.Chr14.339 Chr14 11041785 11042790 PREDICTED: Probable G-protein coupled receptor B0563.6 GO:0004930;GO:0007186;GO:0016020 K05053
gene-evm.TU.Chr14.34 rna-evm.model.Chr14.34 Chr14 1222130 1226890 uncharacterized protein nan nan
gene-evm.TU.Chr14.341 rna-evm.model.Chr14.341 Chr14 11058704 11062205 PREDICTED: Methyltransferase-like protein 24 nan K16381
gene-evm.TU.Chr14.342 rna-evm.model.Chr14.342 Chr14 11074623 11077335 uncharacterized protein nan nan
gene-evm.TU.Chr14.343 rna-evm.model.Chr14.343 Chr14 11088422 11091714 PREDICTED: Methyltransferase-like protein 24 nan K16381
gene-evm.TU.Chr14.344 rna-evm.model.Chr14.344 Chr14 11095626 11099583 PREDICTED: Pyruvyl transferase 1 nan K25913
gene-evm.TU.Chr14.345 rna-evm.model.Chr14.345 Chr14 11117670 11130406 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr14.346 rna-evm.model.Chr14.346 Chr14 11133517 11135432 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr14.348 rna-evm.model.Chr14.348 Chr14 11295590 11296719 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr14.349 rna-evm.model.Chr14.349 Chr14 11304597 11305874 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714

For more detailed data, you can explore the Download section to access the full dataset.