CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.207 rna-evm.model.Chr1.207 Chr1 6342307 6343780 uncharacterized protein nan K16194
gene-evm.TU.Chr1.2071 rna-evm.model.Chr1.2071 Chr1 65429024 65430584 PREDICTED: E3 SUMO-protein ligase KIAA1586 nan K24642
gene-evm.TU.Chr1.2072 rna-evm.model.Chr1.2072 Chr1 65432940 65510639 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.2073 rna-evm.model.Chr1.2073 Chr1 65515599 65518276 uncharacterized protein nan K05465
gene-evm.TU.Chr1.2079 rna-evm.model.Chr1.2079 Chr1 65702082 65707006 uncharacterized protein nan nan
gene-evm.TU.Chr1.208 rna-evm.model.Chr1.208.1 Chr1 6382892 6389576 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.2081 rna-evm.model.Chr1.2081 Chr1 65932890 66038691 PREDICTED: FRAS1-related extracellular matrix protein 2 GO:0007154;GO:0016020 K23383
gene-evm.TU.Chr1.2082 rna-evm.model.Chr1.2082 Chr1 66047330 66061475 PREDICTED: AN1-type zinc finger protein 2B GO:0008270 K24685
gene-evm.TU.Chr1.2083 rna-evm.model.Chr1.2083 Chr1 66064915 66111467 PREDICTED: Centrosomal protein of 135 kDa GO:0007099;GO:0010457 K16461
gene-evm.TU.Chr1.2084 rna-evm.model.Chr1.2084 Chr1 66116887 66120257 PREDICTED: Zinc finger and BTB domain-containing protein 17 GO:0003676 K22402

For more detailed data, you can explore the Download section to access the full dataset.