CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1088 rna-evm.model.Chr1.1088 Chr1 32969465 32987502 PREDICTED: apolipoprotein L GO:0005576;GO:0006869;GO:0008289;GO:0042157 K14480
gene-evm.TU.Chr1.1089 rna-evm.model.Chr1.1089 Chr1 32996434 33021517 PREDICTED: Protein arginine N-methyltransferase 9 GO:0005515;GO:0006479;GO:0008168 K19737
gene-evm.TU.Chr1.109 rna-evm.model.Chr1.109 Chr1 3507533 3526499 PREDICTED: Protein cramped-like nan nan
gene-evm.TU.Chr1.1090 rna-evm.model.Chr1.1090 Chr1 33026067 33039505 PREDICTED: NADH dehydrogenase (ubiquinone) 1 subunit C2 GO:0005743;GO:0006120;GO:0008137 K03968
gene-evm.TU.Chr1.1091 rna-evm.model.Chr1.1091 Chr1 33046077 33081419 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 GO:0003950 K15261
gene-evm.TU.Chr1.1092 rna-evm.model.Chr1.1092 Chr1 33083607 33084245 uncharacterized protein nan K11547
gene-evm.TU.Chr1.1093 rna-evm.model.Chr1.1093 Chr1 33087150 33090698 PREDICTED: Polyamine oxidase 1 GO:0016491;GO:0055114 K13366
gene-evm.TU.Chr1.1094 rna-evm.model.Chr1.1094 Chr1 33103202 33132026 PREDICTED: Acyl-CoA synthetase family member 2, mitochondrial GO:0003824 K23617
gene-evm.TU.Chr1.1095 rna-evm.model.Chr1.1095 Chr1 33134139 33138615 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1096 rna-evm.model.Chr1.1096 Chr1 33164852 33208775 PREDICTED: Glycine receptor subunit alpha-4 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194

For more detailed data, you can explore the Download section to access the full dataset.