CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1033 rna-evm.model.Chr1.1033 Chr1 31469204 31472241 PREDICTED: N-terminal Xaa-Pro-Lys N-methyltransferase 1-B GO:0006480;GO:0008168 K16219
gene-evm.TU.Chr1.1034 rna-evm.model.Chr1.1034 Chr1 31475798 31478453 PREDICTED: N-terminal Xaa-Pro-Lys N-methyltransferase 1-B GO:0006480;GO:0008168 K16219
gene-evm.TU.Chr1.1035 rna-evm.model.Chr1.1035 Chr1 31487519 31553222 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 4 GO:0005515 K04309
gene-evm.TU.Chr1.1037 rna-evm.model.Chr1.1037 Chr1 31573598 31589719 PREDICTED: Calmodulin-like protein 3 GO:0005509 K13448
gene-evm.TU.Chr1.1038 rna-evm.model.Chr1.1038 Chr1 31591834 31604418 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K03546
gene-evm.TU.Chr1.1041 rna-evm.model.Chr1.1041 Chr1 31656876 31683385 uncharacterized protein nan nan
gene-evm.TU.Chr1.1044 rna-evm.model.Chr1.1044 Chr1 31947834 31966674 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.1046 rna-evm.model.Chr1.1046 Chr1 31980645 32018184 PREDICTED: Myotubularin-related protein 8 GO:0046856;GO:0052866 K18083
gene-evm.TU.Chr1.1047 rna-evm.model.Chr1.1047 Chr1 32026925 32046020 PREDICTED: Atrial natriuretic peptide-converting enzyme GO:0004252;GO:0005044;GO:0005515;GO:0006508;GO:0016020 K09614
gene-evm.TU.Chr1.1048 rna-evm.model.Chr1.1048 Chr1 32055783 32092669 PREDICTED: Multiple epidermal growth factor-like domains protein 6 GO:0005509 K24468

For more detailed data, you can explore the Download section to access the full dataset.