CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1133 rna-evm.model.Chr1.1133 Chr1 35387843 35399282 uncharacterized protein nan K11244
gene-evm.TU.Chr1.1134 rna-evm.model.Chr1.1134 Chr1 35400434 35401880 uncharacterized protein nan K02839
gene-evm.TU.Chr1.1135 rna-evm.model.Chr1.1135 Chr1 35405594 35408364 uncharacterized protein nan nan
gene-evm.TU.Chr1.1136 rna-evm.model.Chr1.1136 Chr1 35408373 35414454 PREDICTED: Notch 2 nan K06776
gene-evm.TU.Chr1.1137 rna-evm.model.Chr1.1137 Chr1 35422448 35436670 PREDICTED: Notch 2 nan K10135
gene-evm.TU.Chr1.1139 rna-evm.model.Chr1.1139 Chr1 35492160 35521068 PREDICTED: Translation factor Guf1, mitochondrial GO:0003924;GO:0005525 K21594
gene-evm.TU.Chr1.114 rna-evm.model.Chr1.114 Chr1 3644359 3645750 PREDICTED: Acetylcholine receptor subunit alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.1140 rna-evm.model.Chr1.1140 Chr1 35546010 35548907 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K12026
gene-evm.TU.Chr1.1141 rna-evm.model.Chr1.1141 Chr1 35565265 35568989 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr1.1142 rna-evm.model.Chr1.1142 Chr1 35569036 35569959 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K12896

For more detailed data, you can explore the Download section to access the full dataset.