CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1049 rna-evm.model.Chr1.1049 Chr1 32093741 32099281 PREDICTED: Zinc finger matrin-type protein 2 GO:0000398;GO:0003676;GO:0005681;GO:0008270 K12848
gene-evm.TU.Chr1.1050 rna-evm.model.Chr1.1050 Chr1 32123269 32130908 PREDICTED: Protein Noxp20 nan K18621
gene-evm.TU.Chr1.1051 rna-evm.model.Chr1.1051 Chr1 32160031 32169105 PREDICTED: RING finger protein 121 GO:0046872 K15698
gene-evm.TU.Chr1.1052 rna-evm.model.Chr1.1052 Chr1 32170961 32186892 PREDICTED: Protein FAM47E nan K03243
gene-evm.TU.Chr1.1053 rna-evm.model.Chr1.1053 Chr1 32188091 32191886 PREDICTED: Membrane-associated progesterone receptor component 2 nan K17278
gene-evm.TU.Chr1.1054 rna-evm.model.Chr1.1054 Chr1 32205859 32224895 PREDICTED: Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial GO:0004174;GO:0022900 K00311
gene-evm.TU.Chr1.1055 rna-evm.model.Chr1.1055 Chr1 32224951 32234708 PREDICTED: Mediator of RNA polymerase II transcription subunit 7 GO:0003712;GO:0006357;GO:0016592 K15148
gene-evm.TU.Chr1.1056 rna-evm.model.Chr1.1056 Chr1 32238518 32251428 PREDICTED: von Willebrand factor A domain-containing protein 3B nan K24509
gene-evm.TU.Chr1.1057 rna-evm.model.Chr1.1057 Chr1 32265246 32275142 PREDICTED: Kelch domain-containing protein 1 GO:0005515 K25810
gene-evm.TU.Chr1.1058 rna-evm.model.Chr1.1058 Chr1 32282094 32346976 PREDICTED: Arginine--tRNA ligase, cytoplasmic GO:0000166;GO:0004814;GO:0005524;GO:0005737;GO:0006420 K01887

For more detailed data, you can explore the Download section to access the full dataset.