CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1069 rna-evm.model.Chr1.1069 Chr1 32682228 32684384 PREDICTED: Protein mab-21-like nan K23092
gene-evm.TU.Chr1.107 rna-evm.model.Chr1.107 Chr1 3456891 3477894 PREDICTED: FH2 domain-containing protein 1 GO:0003779;GO:0016043;GO:0030036 K23958
gene-evm.TU.Chr1.1070 rna-evm.model.Chr1.1070 Chr1 32708257 32726886 PREDICTED: Mitochondria-eating protein GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.1071 rna-evm.model.Chr1.1071 Chr1 32731200 32732416 PREDICTED: Caprin-2 nan K23284
gene-evm.TU.Chr1.1072 rna-evm.model.Chr1.1072 Chr1 32737060 32738249 PREDICTED: Collagen alpha-2(VIII) chain nan K23284
gene-evm.TU.Chr1.1073 rna-evm.model.Chr1.1073 Chr1 32740014 32741693 PREDICTED: Collagen alpha-2(VIII) chain nan K23284
gene-evm.TU.Chr1.1074 rna-evm.model.Chr1.1074 Chr1 32744596 32745952 PREDICTED: Complement C1q tumor necrosis factor-related protein 5 nan K23284
gene-evm.TU.Chr1.1075 rna-evm.model.Chr1.1075 Chr1 32752409 32754898 PREDICTED: Cilia- and flagella-associated protein 97 nan K15173
gene-evm.TU.Chr1.1076 rna-evm.model.Chr1.1076 Chr1 32758727 32804604 PREDICTED: placenta growth factor GO:0008083;GO:0016020 nan
gene-evm.TU.Chr1.1078 rna-evm.model.Chr1.1078 Chr1 32826233 32831531 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017

For more detailed data, you can explore the Download section to access the full dataset.