CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1059 rna-evm.model.Chr1.1059 Chr1 32348887 32351275 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr1.106 rna-evm.model.Chr1.106 Chr1 3396080 3418977 PREDICTED: Inverted formin-2 GO:0030036 K23958
gene-evm.TU.Chr1.1060 rna-evm.model.Chr1.1060.2 Chr1 32374416 32430624 PREDICTED: Sodium bicarbonate transporter-like protein 11 GO:0005452;GO:0006820;GO:0016020;GO:0016020 K13862
gene-evm.TU.Chr1.1062 rna-evm.model.Chr1.1062 Chr1 32450577 32470576 PREDICTED: Gamma-aminobutyric acid receptor subunit beta GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05181
gene-evm.TU.Chr1.1063 rna-evm.model.Chr1.1063 Chr1 32474555 32509872 PREDICTED: MPN domain-containing protein GO:0005515 K24173
gene-evm.TU.Chr1.1064 rna-evm.model.Chr1.1064 Chr1 32519931 32540822 PREDICTED: Nucleoporin p58/p45 GO:0005643;GO:0006913;GO:0008139;GO:0017056 K14307
gene-evm.TU.Chr1.1065 rna-evm.model.Chr1.1065 Chr1 32548641 32582784 PREDICTED: Ecdysone-induced protein 74EF isoform A GO:0003700;GO:0006355;GO:0043565 K09428
gene-evm.TU.Chr1.1066 rna-evm.model.Chr1.1066 Chr1 32591297 32611747 PREDICTED: E3 ubiquitin-protein ligase SspH2 nan K15352
gene-evm.TU.Chr1.1067 rna-evm.model.Chr1.1067 Chr1 32647216 32662195 PREDICTED: Nicotinamidase GO:0003824;GO:0005509 K08281
gene-evm.TU.Chr1.1068 rna-evm.model.Chr1.1068 Chr1 32662321 32676902 PREDICTED: Probable E3 ubiquitin-protein ligase MID2 GO:0008270 K12000

For more detailed data, you can explore the Download section to access the full dataset.