CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1097 rna-evm.model.Chr1.1097 Chr1 33246118 33275024 PREDICTED: Ufm1-specific protease 2 nan K01376
gene-evm.TU.Chr1.1098 rna-evm.model.Chr1.1098 Chr1 33280046 33281756 uncharacterized protein nan K24043
gene-evm.TU.Chr1.11 rna-evm.model.Chr1.11 Chr1 486057 505946 uncharacterized protein nan K10130
gene-evm.TU.Chr1.1100_evm.TU.Chr1.1099 rna-evm.model.Chr1.1100_evm.model.Chr1.1099 Chr1 33290244 33457610 PREDICTED: Protein diaphanous homolog 3 GO:0003779;GO:0007015;GO:0007292;GO:0016043;GO:0031267;GO:0030036 K05741
gene-evm.TU.Chr1.1103 rna-evm.model.Chr1.1103 Chr1 33681498 33683313 PREDICTED: Carbonic anhydrase-related protein 10 GO:0004089;GO:0008270 K18245
gene-evm.TU.Chr1.1107 rna-evm.model.Chr1.1107 Chr1 33752603 33753493 PREDICTED: Nipped-B-like protein B, partial nan K25881
gene-evm.TU.Chr1.111 rna-evm.model.Chr1.111 Chr1 3536139 3550950 PREDICTED: Tudor domain-containing protein 3 nan K18404
gene-evm.TU.Chr1.1110 rna-evm.model.Chr1.1110 Chr1 34038807 34115547 PREDICTED: Glutamate receptor 4 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05199
gene-evm.TU.Chr1.1114 rna-evm.model.Chr1.1114 Chr1 34412800 34413429 uncharacterized protein nan K12460
gene-evm.TU.Chr1.1118 rna-evm.model.Chr1.1118 Chr1 34415425 34665802 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038

For more detailed data, you can explore the Download section to access the full dataset.