CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1079 rna-evm.model.Chr1.1079 Chr1 32840222 32842540 PREDICTED: Putative ankyrin repeat protein FPV162 GO:0005515 K21440
gene-evm.TU.Chr1.108 rna-evm.model.Chr1.108 Chr1 3483988 3506439 PREDICTED: microtubule-associated protein Jupiter nan K18635
gene-evm.TU.Chr1.1080 rna-evm.model.Chr1.1080 Chr1 32836003 32849363 PREDICTED: NTF2-related export protein 2 nan K14285
gene-evm.TU.Chr1.1081 rna-evm.model.Chr1.1081 Chr1 32855957 32858357 PREDICTED: Universal stress protein MJ0531 nan K06149
gene-evm.TU.Chr1.1082 rna-evm.model.Chr1.1082 Chr1 32861307 32863922 PREDICTED: Universal stress protein MJ0531 nan K06149
gene-evm.TU.Chr1.1083 rna-evm.model.Chr1.1083 Chr1 32868240 32870359 PREDICTED: Putative ankyrin repeat protein L93 GO:0005515 K15503
gene-evm.TU.Chr1.1084 rna-evm.model.Chr1.1084 Chr1 32871206 32880203 PREDICTED: Ubiquitin-fold modifier 1 GO:0071569 K12162
gene-evm.TU.Chr1.1085 rna-evm.model.Chr1.1085 Chr1 32885042 32918569 PREDICTED: Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 GO:0005515;GO:0005794 K18619
gene-evm.TU.Chr1.1086 rna-evm.model.Chr1.1086 Chr1 32922410 32938225 PREDICTED: DnaJ homolog subfamily A member 3, mitochondrial GO:0031072;GO:0051082 K09504
gene-evm.TU.Chr1.1087 rna-evm.model.Chr1.1087 Chr1 32944128 32954142 PREDICTED: apolipoprotein L nan K14480

For more detailed data, you can explore the Download section to access the full dataset.