CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1119 rna-evm.model.Chr1.1119 Chr1 34735099 34813525 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr1.112 rna-evm.model.Chr1.112 Chr1 3567382 3603642 PREDICTED: Protein HP-25 homolog 1 nan K23284
gene-evm.TU.Chr1.1121 rna-evm.model.Chr1.1121 Chr1 34881989 34883467 uncharacterized protein nan K12867
gene-evm.TU.Chr1.1122 rna-evm.model.Chr1.1122 Chr1 34883620 34884582 PREDICTED: Probable ATP-dependent DNA helicase RecS GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr1.1123 rna-evm.model.Chr1.1123 Chr1 34909102 34909296 uncharacterized protein nan nan
gene-evm.TU.Chr1.1127_evm.TU.Chr1.1124_evm.TU.Chr1.1125 rna-evm.model.Chr1.1127_evm.model.Chr1.1124_evm.model.Chr1.1125 Chr1 34957566 35298237 PREDICTED: Gem-associated protein 5 GO:0005515 K13133
gene-evm.TU.Chr1.1128 rna-evm.model.Chr1.1128 Chr1 35320605 35337373 PREDICTED: myosin heavy chain nan K12575
gene-evm.TU.Chr1.1129 rna-evm.model.Chr1.1129 Chr1 35341716 35347381 PREDICTED: myosin heavy chain nan K05636
gene-evm.TU.Chr1.113 rna-evm.model.Chr1.113 Chr1 3615938 3616466 PREDICTED: complement C1q subcomponent subunit A nan K24236
gene-evm.TU.Chr1.1130 rna-evm.model.Chr1.1130 Chr1 35349621 35352877 uncharacterized protein nan K19080

For more detailed data, you can explore the Download section to access the full dataset.