CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1144 rna-evm.model.Chr1.1144 Chr1 35605081 35728004 PREDICTED: Pericentriolar material 1 protein GO:0005813;GO:0034454;GO:0060271;GO:0071539 K16537
gene-evm.TU.Chr1.1145 rna-evm.model.Chr1.1145 Chr1 35728837 35729584 PREDICTED: Probable RNA-directed DNA polymerase from transposon X-element nan K14530
gene-evm.TU.Chr1.1146 rna-evm.model.Chr1.1146 Chr1 35735307 35744044 PREDICTED: Trafficking protein particle complex subunit 2 GO:0006888 K20301
gene-evm.TU.Chr1.1148 rna-evm.model.Chr1.1148 Chr1 35751964 35754888 uncharacterized protein nan K25538
gene-evm.TU.Chr1.1149 rna-evm.model.Chr1.1149 Chr1 35766917 35775374 PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A GO:0004114;GO:0005515;GO:0007165;GO:0008081 K18438
gene-evm.TU.Chr1.115 rna-evm.model.Chr1.115 Chr1 3667172 3681497 PREDICTED: Complement C1q tumor necrosis factor-related protein 2 nan K24237
gene-evm.TU.Chr1.1150 rna-evm.model.Chr1.1150 Chr1 35779251 35786837 PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A GO:0004114;GO:0005515;GO:0007165;GO:0008081 K18438
gene-evm.TU.Chr1.1151 rna-evm.model.Chr1.1151 Chr1 35792236 35809762 PREDICTED: DCN1-like protein 4 nan K17824
gene-evm.TU.Chr1.1152 rna-evm.model.Chr1.1152.2 Chr1 35827379 35890548 PREDICTED: Cytoplasmic dynein 2 heavy chain 1 GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10414
gene-evm.TU.Chr1.1153 rna-evm.model.Chr1.1153 Chr1 35893496 35921836 uncharacterized protein nan K03254

For more detailed data, you can explore the Download section to access the full dataset.