CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.290 rna-evm.model.Chr14.290 Chr14 9854727 9867739 uncharacterized protein nan nan
gene-evm.TU.Chr14.291 rna-evm.model.Chr14.291.1 Chr14 9868739 9902983 PREDICTED: Serine/threonine kinase-like domain-containing protein STKLD1 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K17546
gene-evm.TU.Chr14.292 rna-evm.model.Chr14.292 Chr14 9908627 9909043 PREDICTED: snRNA-activating protein complex subunit 5 GO:0003700;GO:0005634;GO:0006366;GO:0006384 K15211
gene-evm.TU.Chr14.293 rna-evm.model.Chr14.293 Chr14 9909181 9910997 PREDICTED: Mediator of RNA polymerase II transcription subunit 22 GO:0003712;GO:0006357;GO:0016592 K15139
gene-evm.TU.Chr14.294 rna-evm.model.Chr14.294 Chr14 9917718 9947617 PREDICTED: 60S ribosomal protein L7a nan K02936
gene-evm.TU.Chr14.295 rna-evm.model.Chr14.295 Chr14 9954667 9958452 PREDICTED: Endoplasmic reticulum chaperone BiP nan K09490
gene-evm.TU.Chr14.296 rna-evm.model.Chr14.296 Chr14 9999744 10004751 PREDICTED: Alpha-mannosidase 2 GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr14.298 rna-evm.model.Chr14.298 Chr14 10008632 10012975 PREDICTED: Peptidoglycan recognition protein 1 GO:0008270;GO:0008745;GO:0009253 K01446
gene-evm.TU.Chr14.299 rna-evm.model.Chr14.299 Chr14 10015763 10019136 PREDICTED: Carbohydrate sulfotransferase 13 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr14.3 rna-evm.model.Chr14.3 Chr14 30367 44192 uncharacterized protein nan K20001

For more detailed data, you can explore the Download section to access the full dataset.