CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.31 rna-evm.model.Chr14.31 Chr14 1179136 1181130 PREDICTED: DNA transposase THAP9 GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr14.311 rna-evm.model.Chr14.311 Chr14 10471864 10472094 uncharacterized protein nan nan
gene-evm.TU.Chr14.313 rna-evm.model.Chr14.313 Chr14 10504728 10510085 uncharacterized protein nan K08075
gene-evm.TU.Chr14.318 rna-evm.model.Chr14.318 Chr14 10740892 10747829 uncharacterized protein nan K02186
gene-evm.TU.Chr14.319 rna-evm.model.Chr14.319 Chr14 10774648 10778582 PREDICTED: WD repeat-containing protein 22 nan K07494
gene-evm.TU.Chr14.32 rna-evm.model.Chr14.32 Chr14 1181150 1181832 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr14.320 rna-evm.model.Chr14.320 Chr14 10802092 10832688 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.321 rna-evm.model.Chr14.321 Chr14 10856574 10876993 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr14.323 rna-evm.model.Chr14.323 Chr14 10901592 10902836 uncharacterized protein nan K26978
gene-evm.TU.Chr14.325 rna-evm.model.Chr14.325 Chr14 10904389 10905976 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K11585

For more detailed data, you can explore the Download section to access the full dataset.