CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.30 rna-evm.model.Chr14.30 Chr14 1176715 1178933 PREDICTED: coiled-coil and C2 domain-containing protein 1 nan K12004
gene-evm.TU.Chr14.301 rna-evm.model.Chr14.301 Chr14 10021176 10031425 PREDICTED: Probable hemoglobin and hemoglobin-haptoglobin-binding protein 3 nan K06817
gene-evm.TU.Chr14.302 rna-evm.model.Chr14.302 Chr14 10108443 10112507 PREDICTED: Adhesion G-protein coupled receptor D1 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599
gene-evm.TU.Chr14.303 rna-evm.model.Chr14.303 Chr14 10115723 10121730 PREDICTED: Beta-lactamase domain-containing protein 2 nan K21469
gene-evm.TU.Chr14.304 rna-evm.model.Chr14.304 Chr14 10124394 10136424 PREDICTED: 28S ribosomal protein S18b, mitochondrial GO:0003735;GO:0005840;GO:0006412;GO:0032543 K16174
gene-evm.TU.Chr14.305 rna-evm.model.Chr14.305 Chr14 10148335 10210593 PREDICTED: Serine/threonine-protein phosphatase 1 regulatory subunit 10 GO:0005634;GO:0046872 K17552
gene-evm.TU.Chr14.306 rna-evm.model.Chr14.306 Chr14 10215915 10274619 PREDICTED: Uncharacterized protein K03H1.5 GO:0007160 K23820
gene-evm.TU.Chr14.307 rna-evm.model.Chr14.307.1 Chr14 10324846 10333622 PREDICTED: Demethylmenaquinone methyltransferase GO:0008168 K03183
gene-evm.TU.Chr14.308 rna-evm.model.Chr14.308 Chr14 10346647 10356482 PREDICTED: Uridine-cytidine kinase 2 GO:0005524;GO:0016301;GO:0019206 K00876
gene-evm.TU.Chr14.309 rna-evm.model.Chr14.309 Chr14 10356978 10370734 PREDICTED: coatomer subunit beta' nan K22985

For more detailed data, you can explore the Download section to access the full dataset.