CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.277 rna-evm.model.Chr14.277 Chr14 9459201 9461672 PREDICTED: Laminin subunit beta-1 nan K06675
gene-evm.TU.Chr14.278 rna-evm.model.Chr14.278 Chr14 9518154 9522310 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0015074 K04763
gene-evm.TU.Chr14.280 rna-evm.model.Chr14.280 Chr14 9561480 9562436 PREDICTED: SRC kinase signaling inhibitor 1 nan nan
gene-evm.TU.Chr14.281 rna-evm.model.Chr14.281 Chr14 9564287 9574088 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.284 rna-evm.model.Chr14.284 Chr14 9740242 9752072 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.286 rna-evm.model.Chr14.286 Chr14 9784080 9805279 PREDICTED: Protein GPR107 GO:0016020 K22985
gene-evm.TU.Chr14.287 rna-evm.model.Chr14.287 Chr14 9810857 9814055 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr14.288 rna-evm.model.Chr14.288 Chr14 9826917 9834973 PREDICTED: NF-kappa-B inhibitor-like protein 1 GO:0007249 K09256
gene-evm.TU.Chr14.289 rna-evm.model.Chr14.289 Chr14 9836966 9849391 PREDICTED: Carbohydrate sulfotransferase 1 nan K01022
gene-evm.TU.Chr14.29 rna-evm.model.Chr14.29 Chr14 996353 1097908 PREDICTED: Muscle M-line assembly protein unc-89 GO:0005515 K17341

For more detailed data, you can explore the Download section to access the full dataset.