CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.254 rna-evm.model.Chr14.254 Chr14 8415926 8416264 PREDICTED: Putative enzymatic polyprotein nan K27257
gene-evm.TU.Chr14.255 rna-evm.model.Chr14.255 Chr14 8416710 8416941 uncharacterized protein nan nan
gene-evm.TU.Chr14.256 rna-evm.model.Chr14.256 Chr14 8491888 8492406 PREDICTED: RNA-directed DNA polymerase from transposon BS nan nan
gene-evm.TU.Chr14.257 rna-evm.model.Chr14.257 Chr14 8492576 8493151 uncharacterized protein nan K10772
gene-evm.TU.Chr14.258 rna-evm.model.Chr14.258 Chr14 8495966 8496853 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K11996
gene-evm.TU.Chr14.259 rna-evm.model.Chr14.259 Chr14 8514530 8533299 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr14.26 rna-evm.model.Chr14.26 Chr14 900547 923932 PREDICTED: Transcription initiation factor TFIID subunit 5 GO:0005515;GO:0008521;GO:0016020;GO:0016020 K03130
gene-evm.TU.Chr14.261 rna-evm.model.Chr14.261 Chr14 8727729 8751947 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr14.262 rna-evm.model.Chr14.262 Chr14 8786038 8816332 PREDICTED: Putative RNA-binding protein EEED8.10 GO:0003676 K10273
gene-evm.TU.Chr14.263 rna-evm.model.Chr14.263 Chr14 8849762 8851564 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K13872

For more detailed data, you can explore the Download section to access the full dataset.