CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.265 rna-evm.model.Chr14.265 Chr14 8931305 8964205 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 13 GO:0004222;GO:0006508 K08627
gene-evm.TU.Chr14.266 rna-evm.model.Chr14.266 Chr14 8973861 8988674 PREDICTED: glutamate receptor delta-1 subunit nan K10224
gene-evm.TU.Chr14.267 rna-evm.model.Chr14.267 Chr14 8993009 8999886 PREDICTED: Prefoldin subunit 6 GO:0006457;GO:0016272;GO:0051082 K04798
gene-evm.TU.Chr14.269 rna-evm.model.Chr14.269 Chr14 9118787 9138051 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K01316
gene-evm.TU.Chr14.27 rna-evm.model.Chr14.27 Chr14 924149 945130 PREDICTED: Transcription initiation factor TFIID subunit 5 GO:0005515;GO:0005669 K03130
gene-evm.TU.Chr14.270 rna-evm.model.Chr14.270 Chr14 9196074 9214359 uncharacterized protein nan nan
gene-evm.TU.Chr14.271 rna-evm.model.Chr14.271 Chr14 9235300 9236322 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr14.272 rna-evm.model.Chr14.272 Chr14 9325016 9327992 uncharacterized protein nan K02186
gene-evm.TU.Chr14.273 rna-evm.model.Chr14.273 Chr14 9328017 9328751 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 K07494
gene-evm.TU.Chr14.275 rna-evm.model.Chr14.275 Chr14 9353818 9367101 uncharacterized protein nan K23547

For more detailed data, you can explore the Download section to access the full dataset.