CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.242 rna-evm.model.Chr14.242 Chr14 8132937 8140751 PREDICTED: Alpha-(1,3)-fucosyltransferase 7 GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr14.243 rna-evm.model.Chr14.243 Chr14 8158046 8205196 PREDICTED: Neuronal calcium sensor 1 GO:0005509 K19932
gene-evm.TU.Chr14.244 rna-evm.model.Chr14.244 Chr14 8214115 8229599 PREDICTED: GDP-fucose protein O-fucosyltransferase 1 GO:0007219;GO:0008417 K03691
gene-evm.TU.Chr14.245 rna-evm.model.Chr14.245 Chr14 8241603 8243670 PREDICTED: Immediate early response gene 5 protein nan nan
gene-evm.TU.Chr14.247 rna-evm.model.Chr14.247 Chr14 8297483 8319443 PREDICTED: Probable histone-lysine N-methyltransferase PRDM7 nan K20796
gene-evm.TU.Chr14.248 rna-evm.model.Chr14.248 Chr14 8319993 8323741 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr14.249 rna-evm.model.Chr14.249 Chr14 8336827 8343022 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr14.25 rna-evm.model.Chr14.25 Chr14 674738 682059 PREDICTED: Vacuolar protein sorting-associated protein 8 homolog nan K20178
gene-evm.TU.Chr14.250 rna-evm.model.Chr14.250 Chr14 8352025 8367123 PREDICTED: Delta-aminolevulinic acid dehydratase GO:0004655;GO:0033014;GO:0046872 K01698
gene-evm.TU.Chr14.251 rna-evm.model.Chr14.251 Chr14 8374510 8379641 PREDICTED: Peptidyl-prolyl cis-trans isomerase-like 3 GO:0000413;GO:0003755 K12734

For more detailed data, you can explore the Download section to access the full dataset.