CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.227 rna-evm.model.Chr14.227 Chr14 7682179 7767837 PREDICTED: Proto-oncogene vav GO:0005085;GO:0005515;GO:0035023;GO:0035556 K05730
gene-evm.TU.Chr14.229 rna-evm.model.Chr14.229 Chr14 7776577 7794846 uncharacterized protein nan nan
gene-evm.TU.Chr14.230 rna-evm.model.Chr14.230 Chr14 7794888 7796369 PREDICTED: Rab9 effector protein with kelch motifs nan K20285
gene-evm.TU.Chr14.231 rna-evm.model.Chr14.231 Chr14 7805188 7868445 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0004930;GO:0005044;GO:0005509;GO:0007160;GO:0007186;GO:0016020;GO:0016020 K13912
gene-evm.TU.Chr14.236 rna-evm.model.Chr14.236 Chr14 8004523 8006021 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.237 rna-evm.model.Chr14.237 Chr14 8048623 8056940 PREDICTED: Exonuclease mut-7 homolog GO:0003676;GO:0006139;GO:0008408 K03684
gene-evm.TU.Chr14.239 rna-evm.model.Chr14.239 Chr14 8067816 8089738 PREDICTED: Patched domain-containing protein 3 GO:0016020 K12385
gene-evm.TU.Chr14.24 rna-evm.model.Chr14.24 Chr14 666148 669670 uncharacterized protein nan K20283
gene-evm.TU.Chr14.240 rna-evm.model.Chr14.240 Chr14 8106872 8107456 uncharacterized protein nan K05626
gene-evm.TU.Chr14.241 rna-evm.model.Chr14.241 Chr14 8118469 8119897 PREDICTED: E3 ubiquitin-protein ligase RNF26 nan K15693

For more detailed data, you can explore the Download section to access the full dataset.