CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2227 rna-evm.model.Chr14.2227 Chr14 65864762 65865145 uncharacterized protein nan K19263
gene-evm.TU.Chr14.2229 rna-evm.model.Chr14.2229 Chr14 65881524 65882030 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K24353
gene-evm.TU.Chr14.2232 rna-evm.model.Chr14.2232 Chr14 66099460 66120582 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842;GO:0005515 K22371
gene-evm.TU.Chr14.2233 rna-evm.model.Chr14.2233 Chr14 66122540 66127705 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr14.2238 rna-evm.model.Chr14.2238 Chr14 66410636 66411100 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr14.2239 rna-evm.model.Chr14.2239 Chr14 66416166 66416630 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr14.224 rna-evm.model.Chr14.224 Chr14 7501280 7564927 PREDICTED: Multiple epidermal growth factor-like domains protein 8 GO:0005509 K23664
gene-evm.TU.Chr14.2241 rna-evm.model.Chr14.2241 Chr14 66471914 66472541 uncharacterized protein nan K19555
gene-evm.TU.Chr14.2242 rna-evm.model.Chr14.2242 Chr14 66473273 66476989 uncharacterized protein nan nan
gene-evm.TU.Chr14.225 rna-evm.model.Chr14.225 Chr14 7575175 7632714 PREDICTED: Protein transport protein Sec16A nan K20353

For more detailed data, you can explore the Download section to access the full dataset.