CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.218 rna-evm.model.Chr14.218 Chr14 7419543 7427177 PREDICTED: Pre-mRNA-splicing factor 38B nan K12850
gene-evm.TU.Chr14.2180 rna-evm.model.Chr14.2180 Chr14 64009607 64014699 uncharacterized protein nan K23209
gene-evm.TU.Chr14.2181 rna-evm.model.Chr14.2181 Chr14 64014797 64015747 uncharacterized protein nan nan
gene-evm.TU.Chr14.2183 rna-evm.model.Chr14.2183 Chr14 64041860 64061667 PREDICTED: Histone-lysine N-methyltransferase set-1 GO:0005515 K11428
gene-evm.TU.Chr14.2185 rna-evm.model.Chr14.2185 Chr14 64105783 64106259 uncharacterized protein nan K22662
gene-evm.TU.Chr14.2188 rna-evm.model.Chr14.2188 Chr14 64174361 64187491 PREDICTED: N-lysine methyltransferase KMT5A GO:0005515 K11428
gene-evm.TU.Chr14.2189 rna-evm.model.Chr14.2189 Chr14 64187569 64196913 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan nan
gene-evm.TU.Chr14.2190 rna-evm.model.Chr14.2190 Chr14 64208722 64209441 uncharacterized protein nan nan
gene-evm.TU.Chr14.2192 rna-evm.model.Chr14.2192 Chr14 64237376 64239217 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr14.2193 rna-evm.model.Chr14.2193 Chr14 64261539 64284560 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912

For more detailed data, you can explore the Download section to access the full dataset.