CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2059 rna-evm.model.Chr1.2059 Chr1 65095843 65101554 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr1.206 rna-evm.model.Chr1.206 Chr1 6335437 6342009 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.2060 rna-evm.model.Chr1.2060 Chr1 65102452 65109831 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr1.2061 rna-evm.model.Chr1.2061 Chr1 65112281 65115034 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr1.2062 rna-evm.model.Chr1.2062 Chr1 65119873 65121750 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr1.2063 rna-evm.model.Chr1.2063 Chr1 65211321 65233534 PREDICTED: Glutamate receptor 3 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05200
gene-evm.TU.Chr1.2064 rna-evm.model.Chr1.2064 Chr1 65241711 65304458 PREDICTED: sortilin-related receptor-like GO:0005515;GO:0005576;GO:0006030;GO:0008061 K20050
gene-evm.TU.Chr1.2066 rna-evm.model.Chr1.2066 Chr1 65361328 65398552 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005515;GO:0005576;GO:0006030;GO:0008061 K24469
gene-evm.TU.Chr1.2067 rna-evm.model.Chr1.2067 Chr1 65399166 65409513 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr1.2069 rna-evm.model.Chr1.2069 Chr1 65423236 65423805 PREDICTED: ESCRT-I complex subunit TSG101 nan nan

For more detailed data, you can explore the Download section to access the full dataset.