CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2147 rna-evm.model.Chr14.2147 Chr14 63165029 63165188 uncharacterized protein nan nan
gene-evm.TU.Chr14.2148 rna-evm.model.Chr14.2148 Chr14 63248928 63249610 PREDICTED: P2X purinoceptor 7-like nan nan
gene-evm.TU.Chr14.215 rna-evm.model.Chr14.215 Chr14 7210620 7392618 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0004252;GO:0006508 K01335
gene-evm.TU.Chr14.2152 rna-evm.model.Chr14.2152 Chr14 63282427 63283473 PREDICTED: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) nan nan
gene-evm.TU.Chr14.2153 rna-evm.model.Chr14.2153 Chr14 63284312 63285106 uncharacterized protein GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr14.2155 rna-evm.model.Chr14.2155 Chr14 63297626 63298501 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K10689
gene-evm.TU.Chr14.2157 rna-evm.model.Chr14.2157 Chr14 63318546 63336960 PREDICTED: Chromodomain-helicase-DNA-binding protein 2 nan K20091
gene-evm.TU.Chr14.2158 rna-evm.model.Chr14.2158 Chr14 63336999 63346021 uncharacterized protein nan K05652
gene-evm.TU.Chr14.2159 rna-evm.model.Chr14.2159 Chr14 63417543 63418978 uncharacterized protein nan K06341
gene-evm.TU.Chr14.216 rna-evm.model.Chr14.216 Chr14 7392431 7393717 PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] nan K26094

For more detailed data, you can explore the Download section to access the full dataset.