CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2126 rna-evm.model.Chr14.2126 Chr14 62724714 62725524 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr14.2127 rna-evm.model.Chr14.2127 Chr14 62725749 62726941 PREDICTED: E3 SUMO-protein ligase KIAA1586-like nan nan
gene-evm.TU.Chr14.2128 rna-evm.model.Chr14.2128 Chr14 62727687 62728863 PREDICTED: Zinc finger protein 862 nan K24644
gene-evm.TU.Chr14.2129 rna-evm.model.Chr14.2129.1 Chr14 62830329 62913725 PREDICTED: Discoidin domain-containing receptor 2 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05125
gene-evm.TU.Chr14.2130 rna-evm.model.Chr14.2130 Chr14 62995760 62996353 PREDICTED: NLR family CARD domain-containing protein 3 nan K15974
gene-evm.TU.Chr14.2131 rna-evm.model.Chr14.2131 Chr14 63001030 63002203 PREDICTED: NLR family CARD domain-containing protein 3 nan nan
gene-evm.TU.Chr14.2132 rna-evm.model.Chr14.2132 Chr14 63002531 63003186 uncharacterized protein nan K24106
gene-evm.TU.Chr14.2134 rna-evm.model.Chr14.2134 Chr14 63022431 63022909 uncharacterized protein nan nan
gene-evm.TU.Chr14.2135 rna-evm.model.Chr14.2135 Chr14 63023139 63023856 PREDICTED: putative ATPase nan nan
gene-evm.TU.Chr14.2136 rna-evm.model.Chr14.2136 Chr14 63026257 63043668 PREDICTED: eosinophil peroxidase [EC:1.11.1.7] nan K23284

For more detailed data, you can explore the Download section to access the full dataset.