CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2086 rna-evm.model.Chr14.2086 Chr14 61283064 61304762 PREDICTED: Glutaminase kidney isoform, mitochondrial GO:0004359;GO:0005515;GO:0006541 K01425
gene-evm.TU.Chr14.2087 rna-evm.model.Chr14.2087 Chr14 61312130 61336294 PREDICTED: Ammonium transporter Rh type B-B GO:0008519;GO:0072488;GO:0016020 K06580
gene-evm.TU.Chr14.2088 rna-evm.model.Chr14.2088 Chr14 61355245 61363088 PREDICTED: Glutamine synthetase GO:0004356;GO:0006542;GO:0006807 K01915
gene-evm.TU.Chr14.2089 rna-evm.model.Chr14.2089 Chr14 61377704 61384693 PREDICTED: Glutamine synthetase GO:0004356;GO:0006542;GO:0006807 K01915
gene-evm.TU.Chr14.209 rna-evm.model.Chr14.209 Chr14 7146374 7160702 uncharacterized protein nan nan
gene-evm.TU.Chr14.2090 rna-evm.model.Chr14.2090 Chr14 61398683 61403332 PREDICTED: Glutamine synthetase GO:0004356;GO:0006542;GO:0006807 K01915
gene-evm.TU.Chr14.2091 rna-evm.model.Chr14.2091 Chr14 61503224 61503961 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K02138
gene-evm.TU.Chr14.2092 rna-evm.model.Chr14.2092 Chr14 61511883 61512737 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K02138
gene-evm.TU.Chr14.2093 rna-evm.model.Chr14.2093 Chr14 61527061 61546226 PREDICTED: CUB and sushi domain-containing protein nan K04591
gene-evm.TU.Chr14.2094 rna-evm.model.Chr14.2094 Chr14 61548866 61576346 PREDICTED: calsequestrin-1-like nan K13749

For more detailed data, you can explore the Download section to access the full dataset.