CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2095 rna-evm.model.Chr14.2095 Chr14 61577838 61594840 PREDICTED: Tyramine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.2096 rna-evm.model.Chr14.2096 Chr14 61602534 61625088 PREDICTED: Tyramine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.2097 rna-evm.model.Chr14.2097 Chr14 61627611 61640286 PREDICTED: Medium-chain specific acyl-CoA dehydrogenase, mitochondrial GO:0016627;GO:0050660;GO:0055114 K00249
gene-evm.TU.Chr14.2098 rna-evm.model.Chr14.2098 Chr14 61644860 61664816 PREDICTED: Protein STPG3 nan K25636
gene-evm.TU.Chr14.210 rna-evm.model.Chr14.210 Chr14 7161119 7175546 PREDICTED: Transmembrane protease serine 12 GO:0004252;GO:0006508 K08664
gene-evm.TU.Chr14.2100 rna-evm.model.Chr14.2100 Chr14 61672832 61679908 PREDICTED: Multiple epidermal growth factor-like domains protein 9 GO:0004867;GO:0005515 K24334
gene-evm.TU.Chr14.2103 rna-evm.model.Chr14.2103 Chr14 61852915 61855395 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K17586
gene-evm.TU.Chr14.2105 rna-evm.model.Chr14.2105 Chr14 61881272 61882711 PREDICTED: Toll-like receptor 4 GO:0001819;GO:0002755;GO:0004888;GO:0005515;GO:0007165;GO:0016020;GO:0034146;GO:0042742;GO:0045087;GO:0001817 K10160
gene-evm.TU.Chr14.2106 rna-evm.model.Chr14.2106 Chr14 61973113 61975843 uncharacterized protein nan K12976
gene-evm.TU.Chr14.2107 rna-evm.model.Chr14.2107 Chr14 61989879 61990229 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K21406

For more detailed data, you can explore the Download section to access the full dataset.