CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2062 rna-evm.model.Chr14.2062 Chr14 60764848 60767461 uncharacterized protein GO:0007155;GO:0030246 K20282
gene-evm.TU.Chr14.2063 rna-evm.model.Chr14.2063 Chr14 60768948 60772502 uncharacterized protein GO:0007155;GO:0030246 K25631
gene-evm.TU.Chr14.2064 rna-evm.model.Chr14.2064 Chr14 60777031 60803897 PREDICTED: O-methyltransferase MdmC GO:0008171 K27180
gene-evm.TU.Chr14.2065 rna-evm.model.Chr14.2065 Chr14 60810684 60816198 PREDICTED: Baculoviral IAP repeat-containing protein 3 nan K15688
gene-evm.TU.Chr14.2067 rna-evm.model.Chr14.2067 Chr14 60862557 60864790 PREDICTED: Signaling mucin HKR1 nan K14590
gene-evm.TU.Chr14.2068 rna-evm.model.Chr14.2068 Chr14 60849697 60916836 PREDICTED: Hemicentin-1 GO:0005515 K17341
gene-evm.TU.Chr14.2069 rna-evm.model.Chr14.2069.1 Chr14 60922561 60930447 PREDICTED: Protein SET GO:0005634;GO:0006334 K11290
gene-evm.TU.Chr14.2070 rna-evm.model.Chr14.2070 Chr14 61005665 61006542 PREDICTED: Carbonyl reductase [NADPH] 2 nan K03331
gene-evm.TU.Chr14.2072 rna-evm.model.Chr14.2072 Chr14 61034076 61034462 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr14.2074 rna-evm.model.Chr14.2074 Chr14 61035504 61035890 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725

For more detailed data, you can explore the Download section to access the full dataset.