CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2075 rna-evm.model.Chr14.2075 Chr14 61055623 61066322 PREDICTED: Multiple epidermal growth factor-like domains protein 9 GO:0004867;GO:0005515 K24334
gene-evm.TU.Chr14.2077 rna-evm.model.Chr14.2077 Chr14 61087916 61088491 PREDICTED: ribonuclease ZC3H12 [EC:3.1.-.-] nan K16029
gene-evm.TU.Chr14.2078 rna-evm.model.Chr14.2078 Chr14 61074326 61100078 PREDICTED: Protein STPG3 nan K25636
gene-evm.TU.Chr14.2079 rna-evm.model.Chr14.2079 Chr14 61101115 61114571 PREDICTED: Medium-chain specific acyl-CoA dehydrogenase, mitochondrial GO:0016627;GO:0050660;GO:0055114 K00249
gene-evm.TU.Chr14.208 rna-evm.model.Chr14.208 Chr14 7136467 7139929 PREDICTED: Bile salt sulfotransferase GO:0008146 K22523
gene-evm.TU.Chr14.2080 rna-evm.model.Chr14.2080 Chr14 61119732 61158532 PREDICTED: Tyramine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr14.2081 rna-evm.model.Chr14.2081 Chr14 61160336 61166376 uncharacterized protein nan nan
gene-evm.TU.Chr14.2082 rna-evm.model.Chr14.2082 Chr14 61185856 61191012 PREDICTED: Notch-regulated ankyrin repeat-containing protein GO:0005515 K26480
gene-evm.TU.Chr14.2083 rna-evm.model.Chr14.2083 Chr14 61214204 61255285 PREDICTED: Heparan sulfate 2-O-sulfotransferase 1 GO:0008146;GO:0016020 K02513
gene-evm.TU.Chr14.2085 rna-evm.model.Chr14.2085 Chr14 61259451 61259978 uncharacterized protein nan K01142

For more detailed data, you can explore the Download section to access the full dataset.