CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2048 rna-evm.model.Chr1.2048 Chr1 64768365 64777173 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.2049 rna-evm.model.Chr1.2049 Chr1 64782440 64783317 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.205 rna-evm.model.Chr1.205 Chr1 6334113 6335256 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr1.2050 rna-evm.model.Chr1.2050 Chr1 64791670 64791837 PREDICTED: Ganglioside GM2 activator nan K12383
gene-evm.TU.Chr1.2052 rna-evm.model.Chr1.2052 Chr1 64895363 64895872 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.2053 rna-evm.model.Chr1.2053 Chr1 64895888 64896262 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.2055 rna-evm.model.Chr1.2055 Chr1 64982787 65009451 uncharacterized protein nan K04282
gene-evm.TU.Chr1.2056 rna-evm.model.Chr1.2056 Chr1 65015416 65016681 PREDICTED: G-protein coupled receptor 183 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K04284
gene-evm.TU.Chr1.2057 rna-evm.model.Chr1.2057 Chr1 65021234 65022493 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K04284
gene-evm.TU.Chr1.2058 rna-evm.model.Chr1.2058 Chr1 65060287 65092791 PREDICTED: tRNA-cytidine(32) 2-sulfurtransferase nan K14058

For more detailed data, you can explore the Download section to access the full dataset.