CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2052 rna-evm.model.Chr14.2052 Chr14 60593379 60593676 uncharacterized protein nan nan
gene-evm.TU.Chr14.2053 rna-evm.model.Chr14.2053 Chr14 60626759 60629066 PREDICTED: MAGE-like protein 2 nan nan
gene-evm.TU.Chr14.2055 rna-evm.model.Chr14.2055 Chr14 60648261 60651779 uncharacterized protein nan nan
gene-evm.TU.Chr14.2056 rna-evm.model.Chr14.2056 Chr14 60663103 60674913 PREDICTED: DNA polymerase epsilon subunit 3 nan K02326
gene-evm.TU.Chr14.2057 rna-evm.model.Chr14.2057.3 Chr14 60676617 60696452 PREDICTED: tudor domain-containing protein 5 nan K26458
gene-evm.TU.Chr14.2058 rna-evm.model.Chr14.2058 Chr14 60705630 60745163 PREDICTED: Laminin subunit gamma-1 nan K05635
gene-evm.TU.Chr14.2059 rna-evm.model.Chr14.2059 Chr14 60748687 60749025 PREDICTED: zinc finger protein DZIP1 nan K19081
gene-evm.TU.Chr14.206 rna-evm.model.Chr14.206 Chr14 7118637 7119637 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr14.2060 rna-evm.model.Chr14.2060 Chr14 60756740 60759096 uncharacterized protein GO:0007155;GO:0030246 K20282
gene-evm.TU.Chr14.2061 rna-evm.model.Chr14.2061 Chr14 60759757 60762141 PREDICTED: Discoidin-2 GO:0007155;GO:0030246 K27250

For more detailed data, you can explore the Download section to access the full dataset.