CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2038 rna-evm.model.Chr14.2038 Chr14 60015795 60034961 PREDICTED: Collectin-10 nan K06468
gene-evm.TU.Chr14.2039 rna-evm.model.Chr14.2039 Chr14 60038446 60040565 uncharacterized protein nan K22497
gene-evm.TU.Chr14.2040 rna-evm.model.Chr14.2040 Chr14 60040615 60041238 PREDICTED: Genome polyprotein nan K06245
gene-evm.TU.Chr14.2042 rna-evm.model.Chr14.2042 Chr14 60059439 60110590 PREDICTED: Transmembrane protease serine 12 GO:0004252;GO:0006508 K01332
gene-evm.TU.Chr14.2043 rna-evm.model.Chr14.2043 Chr14 60138185 60138529 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan nan
gene-evm.TU.Chr14.2044 rna-evm.model.Chr14.2044 Chr14 60138919 60142166 uncharacterized protein nan K26653
gene-evm.TU.Chr14.2046 rna-evm.model.Chr14.2046 Chr14 60203573 60204640 PREDICTED: CD109 antigen nan K24353
gene-evm.TU.Chr14.2048 rna-evm.model.Chr14.2048 Chr14 60335000 60350222 PREDICTED: Neurotrypsin GO:0004222;GO:0004252;GO:0005044;GO:0006508;GO:0016020 K09624
gene-evm.TU.Chr14.2049 rna-evm.model.Chr14.2049 Chr14 60373117 60383966 PREDICTED: Pappalysin-1 nan K04006
gene-evm.TU.Chr14.2051 rna-evm.model.Chr14.2051 Chr14 60482668 60589179 PREDICTED: Macrophage mannose receptor 1 GO:0004252;GO:0005044;GO:0006508;GO:0016020 K06560

For more detailed data, you can explore the Download section to access the full dataset.