CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2017 rna-evm.model.Chr14.2017 Chr14 59504707 59519106 PREDICTED: 4-coumarate--CoA ligase GO:0003824 K01904
gene-evm.TU.Chr14.2018 rna-evm.model.Chr14.2018 Chr14 59522936 59574040 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0005515;GO:0016020 K05038
gene-evm.TU.Chr14.2019 rna-evm.model.Chr14.2019 Chr14 59577045 59605600 PREDICTED: Perlucin nan K06560
gene-evm.TU.Chr14.202 rna-evm.model.Chr14.202 Chr14 6905065 6941448 PREDICTED: Long-chain fatty acid transport protein 4 GO:0003824;GO:0004467;GO:0015245;GO:0016020;GO:0031957 K08745
gene-evm.TU.Chr14.2020 rna-evm.model.Chr14.2020 Chr14 59624859 59653659 PREDICTED: fibroblast growth factor receptor 3 [EC:2.7.10.1] GO:0005515 K24485
gene-evm.TU.Chr14.2021 rna-evm.model.Chr14.2021 Chr14 59660355 59696810 PREDICTED: Probable serine/threonine-protein kinase roco5 nan K08844
gene-evm.TU.Chr14.2022 rna-evm.model.Chr14.2022 Chr14 59707462 59721866 PREDICTED: Cyclin-dependent kinase 9 GO:0004672;GO:0005524;GO:0006468 K02211
gene-evm.TU.Chr14.2023 rna-evm.model.Chr14.2023 Chr14 59726145 59732227 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr14.2024 rna-evm.model.Chr14.2024 Chr14 59734319 59741975 PREDICTED: E3 ubiquitin-protein ligase TRIM71 GO:0008270 K12026
gene-evm.TU.Chr14.2026 rna-evm.model.Chr14.2026 Chr14 59758302 59758922 PREDICTED: TM2 domain-containing protein 1 nan K19370

For more detailed data, you can explore the Download section to access the full dataset.