CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.2002 rna-evm.model.Chr14.2002 Chr14 59182105 59183233 uncharacterized protein nan K05466
gene-evm.TU.Chr14.2003 rna-evm.model.Chr14.2003 Chr14 59186715 59196858 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K19894
gene-evm.TU.Chr14.2005 rna-evm.model.Chr14.2005 Chr14 59211911 59212588 uncharacterized protein nan nan
gene-evm.TU.Chr14.2006 rna-evm.model.Chr14.2006 Chr14 59218682 59222428 uncharacterized protein nan K03830
gene-evm.TU.Chr14.2009 rna-evm.model.Chr14.2009 Chr14 59265210 59270553 PREDICTED: BRISC and BRCA1-A complex member 1 nan nan
gene-evm.TU.Chr14.2012 rna-evm.model.Chr14.2012 Chr14 59290593 59418976 PREDICTED: Hemicentin-1 GO:0005509 K17341
gene-evm.TU.Chr14.2013 rna-evm.model.Chr14.2013 Chr14 59426205 59427317 PREDICTED: Galanin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K05053
gene-evm.TU.Chr14.2014 rna-evm.model.Chr14.2014.1 Chr14 59432135 59463874 uncharacterized protein nan nan
gene-evm.TU.Chr14.2015 rna-evm.model.Chr14.2015 Chr14 59472022 59473707 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr14.2016 rna-evm.model.Chr14.2016 Chr14 59487756 59498113 PREDICTED: Pyrimidine-specific ribonucleoside hydrolase RihA nan K01250

For more detailed data, you can explore the Download section to access the full dataset.