CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1991 rna-evm.model.Chr14.1991 Chr14 58778874 58779959 PREDICTED: ELAV-like protein 2 GO:0003676;GO:0003723 K13088
gene-evm.TU.Chr14.1992 rna-evm.model.Chr14.1992 Chr14 58784969 58786126 PREDICTED: ELAV-like protein 2 GO:0003676;GO:0003723 K13208
gene-evm.TU.Chr14.1993 rna-evm.model.Chr14.1993 Chr14 58790640 58813614 PREDICTED: TBC1 domain family member 13 nan K24796
gene-evm.TU.Chr14.1995 rna-evm.model.Chr14.1995 Chr14 58862053 58865725 PREDICTED: Uncharacterized protein KIAA1958 nan K21754
gene-evm.TU.Chr14.1997 rna-evm.model.Chr14.1997 Chr14 58914298 58945649 uncharacterized protein nan nan
gene-evm.TU.Chr14.1999 rna-evm.model.Chr14.1999 Chr14 59004135 59015416 PREDICTED: Alpha-(1,6)-fucosyltransferase nan K09705
gene-evm.TU.Chr14.2 rna-evm.model.Chr14.2 Chr14 14490 15508 PREDICTED: Hemicentin-1 nan K06841
gene-evm.TU.Chr14.20 rna-evm.model.Chr14.20 Chr14 500872 503300 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K22594
gene-evm.TU.Chr14.200 rna-evm.model.Chr14.200 Chr14 6864321 6886248 PREDICTED: RING finger protein 44 nan K19041
gene-evm.TU.Chr14.2000 rna-evm.model.Chr14.2000 Chr14 59033893 59034967 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan nan

For more detailed data, you can explore the Download section to access the full dataset.