CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1980 rna-evm.model.Chr14.1980 Chr14 58353832 58355022 uncharacterized protein nan K10398
gene-evm.TU.Chr14.1982 rna-evm.model.Chr14.1982.2 Chr14 58382324 58475544 PREDICTED: Centriolin GO:0005515;GO:0005815;GO:0008092;GO:0051493 K16770
gene-evm.TU.Chr14.1983 rna-evm.model.Chr14.1983 Chr14 58482953 58486622 PREDICTED: Haloacid dehalogenase-like hydrolase domain-containing protein 3 GO:0016787 K20862
gene-evm.TU.Chr14.1984 rna-evm.model.Chr14.1984 Chr14 58506514 58616961 PREDICTED: Transposable element Tc1 transposase nan nan
gene-evm.TU.Chr14.1985 rna-evm.model.Chr14.1985 Chr14 58621943 58642990 PREDICTED: Tyrosine-protein kinase FRK GO:0004672;GO:0005524;GO:0006468 K08892
gene-evm.TU.Chr14.1987 rna-evm.model.Chr14.1987 Chr14 58687828 58696329 uncharacterized protein nan K16772
gene-evm.TU.Chr14.1988 rna-evm.model.Chr14.1988 Chr14 58693539 58721009 uncharacterized protein nan K17834
gene-evm.TU.Chr14.1989 rna-evm.model.Chr14.1989 Chr14 58729054 58754989 PREDICTED: E3 ubiquitin-protein ligase COP1 GO:0005515 K10143
gene-evm.TU.Chr14.199 rna-evm.model.Chr14.199 Chr14 6831851 6854889 PREDICTED: NXPE family member 3 nan nan
gene-evm.TU.Chr14.1990 rna-evm.model.Chr14.1990 Chr14 58772807 58774328 PREDICTED: ELAV-like protein 1 GO:0003676;GO:0003723 K13088

For more detailed data, you can explore the Download section to access the full dataset.