CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1934 rna-evm.model.Chr14.1934 Chr14 57208814 57216926 PREDICTED: THAP domain-containing protein 10 GO:0003676 K23210
gene-evm.TU.Chr14.1935 rna-evm.model.Chr14.1935 Chr14 57217473 57218946 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr14.1936 rna-evm.model.Chr14.1936 Chr14 57221484 57223277 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K17604
gene-evm.TU.Chr14.1937 rna-evm.model.Chr14.1937 Chr14 57223305 57224918 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan nan
gene-evm.TU.Chr14.1938 rna-evm.model.Chr14.1938 Chr14 57236026 57239361 uncharacterized protein nan nan
gene-evm.TU.Chr14.1939 rna-evm.model.Chr14.1939 Chr14 57240629 57241625 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K17928
gene-evm.TU.Chr14.1942 rna-evm.model.Chr14.1942 Chr14 57274350 57277053 uncharacterized protein GO:0008270 nan
gene-evm.TU.Chr14.1949 rna-evm.model.Chr14.1949 Chr14 57558097 57559222 uncharacterized protein nan K24195
gene-evm.TU.Chr14.1952 rna-evm.model.Chr14.1952 Chr14 57604137 57638472 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.1955 rna-evm.model.Chr14.1955 Chr14 57826700 57832149 PREDICTED: IgGFc-binding protein nan K05103

For more detailed data, you can explore the Download section to access the full dataset.