CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1922 rna-evm.model.Chr14.1922 Chr14 56890043 56893104 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr14.1924 rna-evm.model.Chr14.1924 Chr14 56946337 56951971 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr14.1925 rna-evm.model.Chr14.1925 Chr14 56962558 56977973 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr14.1926 rna-evm.model.Chr14.1926 Chr14 56984806 57006738 PREDICTED: Chitin synthase chs-2 GO:0005515;GO:0016758 K00698
gene-evm.TU.Chr14.1928 rna-evm.model.Chr14.1928 Chr14 57024482 57037612 PREDICTED: Heat shock 70 kDa protein 12B nan K23284
gene-evm.TU.Chr14.1929 rna-evm.model.Chr14.1929 Chr14 57052565 57063838 PREDICTED: Secretory phospholipase A2 receptor nan K06560
gene-evm.TU.Chr14.1930 rna-evm.model.Chr14.1930 Chr14 57076476 57078074 PREDICTED: autophagy-related protein 18 nan K18921
gene-evm.TU.Chr14.1931 rna-evm.model.Chr14.1931 Chr14 57109168 57164640 PREDICTED: Fibropellin-3 GO:0005509 K20994
gene-evm.TU.Chr14.1932 rna-evm.model.Chr14.1932 Chr14 57203662 57205369 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr14.1933 rna-evm.model.Chr14.1933 Chr14 57207926 57208748 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan nan

For more detailed data, you can explore the Download section to access the full dataset.