CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1909 rna-evm.model.Chr14.1909 Chr14 56567436 56573130 PREDICTED: B-cell lymphoma/leukemia 10 GO:0006915;GO:0042981;GO:0051092 K07368
gene-evm.TU.Chr14.191 rna-evm.model.Chr14.191 Chr14 6249568 6251506 uncharacterized protein nan K15367
gene-evm.TU.Chr14.1910 rna-evm.model.Chr14.1910 Chr14 56579629 56584757 PREDICTED: Sjoegren syndrome nuclear autoantigen 1 homolog nan K16780
gene-evm.TU.Chr14.1914 rna-evm.model.Chr14.1914 Chr14 56693179 56695868 uncharacterized protein nan nan
gene-evm.TU.Chr14.1915 rna-evm.model.Chr14.1915 Chr14 56716632 56778988 PREDICTED: G-protein-signaling modulator 2 GO:0005515;GO:0030695 K15837
gene-evm.TU.Chr14.1916 rna-evm.model.Chr14.1916 Chr14 56784270 56814345 PREDICTED: Pre-mRNA-splicing factor SYF1 GO:0005515;GO:0006396 K12867
gene-evm.TU.Chr14.1917 rna-evm.model.Chr14.1917 Chr14 56818395 56835776 uncharacterized protein GO:0004521;GO:0090305 K17108
gene-evm.TU.Chr14.1919 rna-evm.model.Chr14.1919 Chr14 56856950 56862740 uncharacterized protein nan K23284
gene-evm.TU.Chr14.192 rna-evm.model.Chr14.192 Chr14 6326857 6327026 uncharacterized protein nan nan
gene-evm.TU.Chr14.1921 rna-evm.model.Chr14.1921 Chr14 56871615 56887810 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.