CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1889 rna-evm.model.Chr14.1889 Chr14 55930096 55946515 PREDICTED: Anaphase-promoting complex subunit 2 GO:0006511;GO:0031625 K03349
gene-evm.TU.Chr14.189 rna-evm.model.Chr14.189 Chr14 6238772 6239377 uncharacterized protein nan K10804
gene-evm.TU.Chr14.1890 rna-evm.model.Chr14.1890 Chr14 55952045 55961548 PREDICTED: Calcium load-activated calcium channel GO:0005262;GO:0016020;GO:0030176;GO:0032469 K21891
gene-evm.TU.Chr14.1891 rna-evm.model.Chr14.1891 Chr14 55966301 56004357 PREDICTED: RAB6-interacting golgin nan K19748
gene-evm.TU.Chr14.1892 rna-evm.model.Chr14.1892 Chr14 56022773 56032631 PREDICTED: Divergent protein kinase domain 1A GO:0005509 K21128
gene-evm.TU.Chr14.1893 rna-evm.model.Chr14.1893 Chr14 56060885 56072240 PREDICTED: Protein FAM102B nan nan
gene-evm.TU.Chr14.1894 rna-evm.model.Chr14.1894 Chr14 56080012 56083986 uncharacterized protein GO:0008270 K11997
gene-evm.TU.Chr14.1895 rna-evm.model.Chr14.1895 Chr14 56122917 56144334 PREDICTED: LIM/homeobox protein Lhx3 GO:0003677 K09374
gene-evm.TU.Chr14.1897 rna-evm.model.Chr14.1897 Chr14 56212020 56215139 PREDICTED: LIM/homeobox protein Lhx4 GO:0003677 K09374
gene-evm.TU.Chr14.1898 rna-evm.model.Chr14.1898 Chr14 56218260 56220527 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.