CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1879 rna-evm.model.Chr14.1879.1 Chr14 55699718 55758266 PREDICTED: Choline transporter-like protein 4 nan K15377
gene-evm.TU.Chr14.188 rna-evm.model.Chr14.188 Chr14 6218056 6218884 PREDICTED: Mariner Mos1 transposase nan K07499
gene-evm.TU.Chr14.1880 rna-evm.model.Chr14.1880 Chr14 55782208 55824942 PREDICTED: Choline transporter-like protein 4 nan K15377
gene-evm.TU.Chr14.1881 rna-evm.model.Chr14.1881 Chr14 55826965 55831810 PREDICTED: Retinoic acid receptor RXR-gamma-A GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08705
gene-evm.TU.Chr14.1882 rna-evm.model.Chr14.1882 Chr14 55841144 55844642 PREDICTED: Phospholipid phosphatase 6 nan K22904
gene-evm.TU.Chr14.1883 rna-evm.model.Chr14.1883 Chr14 55845797 55848688 PREDICTED: Protein FAM78A nan K24982
gene-evm.TU.Chr14.1884 rna-evm.model.Chr14.1884 Chr14 55849114 55881322 PREDICTED: Nuclear pore complex protein Nup214 nan K14317
gene-evm.TU.Chr14.1885 rna-evm.model.Chr14.1885 Chr14 55883836 55892601 PREDICTED: Multivesicular body subunit 12B GO:0000813 K12186
gene-evm.TU.Chr14.1887 rna-evm.model.Chr14.1887 Chr14 55904916 55907494 uncharacterized protein nan K23092
gene-evm.TU.Chr14.1888 rna-evm.model.Chr14.1888 Chr14 55912490 55927872 PREDICTED: NADPH-dependent diflavin oxidoreductase 1 GO:0010181;GO:0016491;GO:0055114 K00327

For more detailed data, you can explore the Download section to access the full dataset.