CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1899 rna-evm.model.Chr14.1899 Chr14 56223828 56232956 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr14.1900 rna-evm.model.Chr14.1900 Chr14 56241547 56249232 PREDICTED: Kynurenine formamidase GO:0004061;GO:0019441 K07130
gene-evm.TU.Chr14.1901 rna-evm.model.Chr14.1901 Chr14 56249201 56259938 uncharacterized protein nan K06068
gene-evm.TU.Chr14.1902 rna-evm.model.Chr14.1902.1 Chr14 56334791 56390585 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr14.1903 rna-evm.model.Chr14.1903 Chr14 56360345 56363640 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr14.1904 rna-evm.model.Chr14.1904 Chr14 56440525 56453444 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr14.1905 rna-evm.model.Chr14.1905 Chr14 56479399 56480396 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr14.1906 rna-evm.model.Chr14.1906 Chr14 56512840 56513915 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr14.1907 rna-evm.model.Chr14.1907 Chr14 56540775 56545045 PREDICTED: sex comb on midleg-like protein 4 nan K04334
gene-evm.TU.Chr14.1908 rna-evm.model.Chr14.1908 Chr14 56548029 56567377 PREDICTED: mitochondrial protein import protein ZIM17 nan nan

For more detailed data, you can explore the Download section to access the full dataset.