CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1841 rna-evm.model.Chr14.1841 Chr14 54423326 54427360 PREDICTED: Transcriptional-regulating factor 1 nan K26583
gene-evm.TU.Chr14.1842 rna-evm.model.Chr14.1842 Chr14 54428700 54431078 PREDICTED: UPF0612 protein C569.003 GO:0003341;GO:0005930;GO:0036159 K10642
gene-evm.TU.Chr14.1843 rna-evm.model.Chr14.1843 Chr14 54551347 54551649 uncharacterized protein nan nan
gene-evm.TU.Chr14.1845 rna-evm.model.Chr14.1845 Chr14 54657276 54657506 uncharacterized protein nan nan
gene-evm.TU.Chr14.1846 rna-evm.model.Chr14.1846 Chr14 54770024 54800951 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307
gene-evm.TU.Chr14.1850 rna-evm.model.Chr14.1850.1 Chr14 55078290 55108616 PREDICTED: Hemicentin-1 nan K13276
gene-evm.TU.Chr14.1851_evm.TU.Chr14.1850 rna-evm.model.Chr14.1851_evm.model.Chr14.1850 Chr14 55078290 55138617 PREDICTED: Hemicentin-1 nan K23710
gene-evm.TU.Chr14.1854 rna-evm.model.Chr14.1854 Chr14 55179837 55181320 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K17604
gene-evm.TU.Chr14.1855 rna-evm.model.Chr14.1855 Chr14 55183969 55185876 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K05220
gene-evm.TU.Chr14.1856 rna-evm.model.Chr14.1856 Chr14 55254508 55276082 PREDICTED: Cathepsin K GO:0006508;GO:0008234 K01365

For more detailed data, you can explore the Download section to access the full dataset.